PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G105600.1
Common NameB456_007G105600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 298aa    MW: 34080.1 Da    PI: 4.6536
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G105600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-20116165255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +grW+AeIrdp++   r+r++lg+++taeeAa  +++a+ +++g
  Gorai.007G105600.1 116 KYRGVRQRP-WGRWAAEIRDPTS---RTRVWLGTYDTAEEAALVYDRAAIQIKG 165
                         8********.**********965...4**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-22116173IPR016177DNA-binding domain
CDDcd000186.72E-34116173No hitNo description
PfamPF008474.0E-14116165IPR001471AP2/ERF domain
PROSITE profilePS5103223.815116173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-30116173IPR001471AP2/ERF domain
SMARTSM003802.7E-37116179IPR001471AP2/ERF domain
PRINTSPR003676.0E-11117128IPR001471AP2/ERF domain
PRINTSPR003676.0E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MNPGSPLRVK YREQRTVTKK LVKPSSEWFC MESKAKAPKI VRICVTDEDA TDSSSDECEG  60
ETYHTVKRHV NEIRIQDCST VNFTKPTNHQ IINKSNHVDI RSKKQQQQQC LSMGVKYRGV  120
RQRPWGRWAA EIRDPTSRTR VWLGTYDTAE EAALVYDRAA IQIKGPDAVT NFAQPPLRPD  180
IDLDIIPGYD CGQESQSLCS PTFVLRFQTN EEAELQIQSK DDYFEHGWKL EEDLPGQPTS  240
LSDEYLLTDT TVALCDYFNS GNPEPIFFDE MRLAEENISV KLDIDFGACT WEVDDYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22114178365ATERF1
3gcc_A2e-22114178365ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490063.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
TrEMBLA0A0D2SB190.0A0A0D2SB19_G
STRINGPOPTR_0002s16900.14e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.15e-47cytokinin response factor 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]